Bioconductor DESeq2

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deseq2

updated 14 hours ago by Seyram M. • 0 • written 4.5 years ago by hsbio ▴ 10

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DESeq2

updated 10 hours ago by Michael Love 41k • written 1 day ago by andrebolerbarros ▴ 20

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DESeq2 BatchEffect sva limma

updated 5 hours ago by Michael Love 41k • written 5 months ago by Crystal571 • 0

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DESeq2

2 days ago • updated 4 hours ago Rajat • 0

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DESeq2

2 hours ago Brynn • 0

5 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700

> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…

Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

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Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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