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DESeq2
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0
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2
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21
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Different Shrunk Log2FC according with reference
DESeq2
1 hour ago
andrebolerbarros
▴ 20
0
votes
0
replies
12
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
2 hours ago
winwater0928
• 0
1
vote
1
reply
93
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 8 hours ago by
Michael Love
41k • written 16 hours ago by
i.sudbery
▴ 40
0
votes
3
replies
64
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DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 2 hours ago by
ATpoint
★ 4.0k • written 18 hours ago by
Aaliya
• 0
3
votes
3
replies
138
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DESeq2 - dispersion estimation when there is none
DESeq2
updated 20 hours ago by
Michael Love
41k • written 1 day ago by
WardDeb
• 0
6
votes
16
replies
2.2k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 19 hours ago by
Michael Love
41k • written 4.6 years ago by
hsbio
▴ 10
6 results • Page
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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shepherl
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