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DESeq2
•
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0
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29
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Filtering after DESeq
DESeq2
IHW
2 days ago
caroline.zanchi
• 0
0
votes
1
reply
217
views
Analyzing TnSeq data with DESeq2
DESeq2
updated 3 days ago by
cold.wolverine.arku
• 0 • written 4 days ago by
Lynn
• 0
0
votes
1
reply
605
views
How do I set up my DESeq analysis when I know a few vehicle control samples provide background effects we don't want to see in any of the subsequent …
DESeq2
RUVSeq
updated 5 days ago by
Michael Love
43k • written 4 weeks ago by
Simran
• 0
0
votes
2
replies
448
views
Differing results with DESeq2
DESeq2
updated 3 days ago by
JKim
• 0 • written 23 days ago by
hampsdiv
• 0
0
votes
2
replies
309
views
RNA Seq using Lrt
DESeq2
5 days ago • updated 4 days ago
Rob
• 0
8
votes
9
replies
16k
views
GSEA preranked analysis downstream of DEseq2
deseq2
gsea
rnaseq
updated 2 days ago by
Ajay
• 0 • written 8.7 years ago by
EJ
▴ 20
2
votes
3
replies
2.3k
views
How to convert transcript counts to gene counts in R?
DESeq2
tximport
updated 4 days ago by
ben
• 0 • written 2.5 years ago by
L
▴ 50
0
votes
2
replies
2.8k
views
DESeq2 Design controlling for gender
deseq2
multiple factor design
updated 2 days ago by
donnycrimson
• 0 • written 7.6 years ago by
rejane.troudet
• 0
0
votes
3
replies
1.9k
views
Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2
random effects
batch effects
RNA-seq
rna-seq
updated 2 days ago by
donnycrimson
• 0 • written 7.8 years ago by
Dipro
• 0
9 results • Page
1 of 1
Recent ...
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Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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