Bioconductor DESeq2

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DESeq2

3 months ago • updated 3 days ago colinmccornack • 0

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DESeq2

updated 3 days ago by a2a2ddrhaa • 0 • written 9 months ago by dudutchy ▴ 10

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DESeq2

updated 4 days ago by ATpoint ★ 5.0k • written 4 days ago by js101 • 0

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DESeq2

5 days ago Syed • 0

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DESeq2 RNASeq edgeR limma

6 days ago • updated 5 days ago Mariami • 0

5 results • Page 1 of 1

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Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0

try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760