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DESeq2
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1
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4
replies
2.9k
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Pairwise comparison of multiple groups with different base
deseq2
rna-seq
r
updated 25 days ago by
ja569116
• 0 • written 5.7 years ago by
thjnant
▴ 10
0
votes
5
replies
2.3k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
written 10.0 years ago by
john.hu
• 0
3
votes
3
replies
2.2k
views
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
DESeq2
updated 1 day ago by
a2a2ddrhaa
• 0 • written 9 months ago by
dudutchy
▴ 10
2
votes
5
replies
951
views
Joining different datasets and analyzing using the group-specific condition effects strategy (DESeq2)
DESeq2
updated 29 days ago by
James W. MacDonald
68k • written 3.0 years ago by
Ana
• 0
0
votes
13
replies
851
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 17 days ago by
Gordon Smyth
53k • written 23 days ago by
chp265
• 0
0
votes
6
replies
655
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 24 days ago by
Martin Morgan
25k • written 10 weeks ago by
Benjamin
• 0
0
votes
3
replies
417
views
DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
sva
lfcshrink
DESeq2
7 weeks ago • updated 27 days ago
ja569116
• 0
0
votes
1
reply
301
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 23 days ago by
ATpoint
★ 5.0k • written 26 days ago by
ja569116
• 0
0
votes
5
replies
269
views
Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq
DESeq2
DifferentialExpression
updated 16 days ago by
Michael Love
43k • written 16 days ago by
Ahmed Salah
• 0
1
vote
4
replies
217
views
Bulk RNAseq analysis for
DESeq2
RNASeq
edgeR
limma
3 days ago • updated 2 days ago
Mariami
• 0
0
votes
1
reply
217
views
[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
3 months ago • updated 5 hours ago
colinmccornack
• 0
0
votes
2
replies
211
views
lfc shrinkage estimator in DESeq2
DESeq2
written 17 days ago by
julia_mcdonough
• 0
0
votes
1
reply
160
views
DESeq2 for 16S rRNA Analysis
DESeq2
updated 13 days ago by
James W. MacDonald
68k • written 14 days ago by
lizflor
• 0
0
votes
1
reply
154
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 4 weeks ago by
Frances Turner
▴ 20
0
votes
1
reply
70
views
Subsetting data verses contrasts [DESeq2]?
DESeq2
updated 1 day ago by
ATpoint
★ 5.0k • written 1 day ago by
js101
• 0
0
votes
0
replies
49
views
How to start learning RNA sequence analysis with DESeq2
DESeq2
2 days ago
Syed
• 0
16 results • Page
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Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Erik Wright
▴ 150
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Votes
Answer: Can you colour dendrogram branch clusters in pheatmap?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
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