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DESeq2
•
reset
38
votes
23
replies
17k
views
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
deseq2
10.6 years ago • updated 28 days ago
Michael Love
43k
5
votes
30
replies
5.9k
views
DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2
multiple time points
time course
casecontrol
model design
updated 18 days ago by
wuwenhui2
• 0 • written 7.8 years ago by
heikki.sarin
▴ 10
4
votes
6
replies
1.2k
views
Surprising behavior for DEXseq dispersion estimate plot?
DESeq2
DEXSeq
updated 21 days ago by
ATpoint
★ 4.8k • written 6 weeks ago by
Elijah
• 0
2
votes
4
replies
1.7k
views
deseq2 lfc shrinkage with few DEGs
RNASeq
DESeq2
updated 28 days ago by
Michael Love
43k • written 2.8 years ago by
Victor
▴ 10
1
vote
3
replies
5.6k
views
DESeq2 estimateSizeFactors with control genes
deseq2
differential gene expression
controls
references
updated 25 days ago by
sofia.rigou
• 0 • written 6.4 years ago by
cris.kgs
• 0
1
vote
1
reply
1.1k
views
PhD scholar
RNASeqAnalysis
DESeq2
updated 7 days ago by
shepherl
4.1k • written 7 days ago by
Richa
• 0
1
vote
4
replies
412
views
DESEQ2 looking at main effects while controlling for a continuous variable
DESeq2
29 days ago • updated 24 days ago
Lennie
• 0
1
vote
8
replies
2.2k
views
[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw
ChIPseq
DESeq2
DiffBind
5 weeks ago • updated 9 days ago
Luca
• 0
1
vote
3
replies
753
views
DESeq - help with pair wise comparisons
DESeq2
11 days ago
bd2000
▴ 30
1
vote
8
replies
2.5k
views
DESeq: Gene is not flagged as differentially expressed despite count data showing differences
DifferentialExpression
DESeq2
14 days ago • updated 11 days ago
ktz
• 0
0
votes
1
reply
255
views
DESeq2 - am I extracting results incorrectly?
DESeq2
updated 10 days ago by
James W. MacDonald
68k • written 10 days ago by
bd2000
▴ 30
0
votes
4
replies
554
views
Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Analysis
DESeq2
TechnicalReplicates
RNASeq
written 4 weeks ago by
questionanswer
• 0
0
votes
3
replies
665
views
Log2foldchange strange behavior
DESeq2
updated 4 days ago by
ATpoint
★ 4.8k • written 4 days ago by
RambakKulit
• 0
0
votes
1
reply
543
views
DESeq2
org.Mmu.eg.db
DESeq2
TimeCourse
DMSOvsdrug
RNASeqData
updated 20 days ago by
ATpoint
★ 4.8k • written 20 days ago by
Cosmic
• 0
0
votes
2
replies
1.1k
views
DeSeq Strategies for run to run Replication
DESeq2
Normalization
Clustering
replicate
updated 3 days ago by
i.c.denhond
• 0 • written 2.6 years ago by
Giorgio
• 0
0
votes
1
reply
507
views
WGCNA
WGCNA
DESeq2
updated 7 days ago by
ATpoint
★ 4.8k • written 10 days ago by
bioinformaticssrm2011
• 0
0
votes
1
reply
760
views
Comparison of results obtained from a subset of the data versus the complete dataset for a few selected genes.
DESeq2
updated 7 days ago by
swbarnes2
★ 1.4k • written 8 days ago by
Bioinformatician_R
▴ 20
0
votes
11
replies
1.9k
views
Question about using LRT test for time course experiments with DESeq2
DESeq2
updated 16 days ago by
Rob
• 0 • written 5 months ago by
Denise
• 0
0
votes
0
replies
120
views
Differing results with DESeq2
DESeq2
14 days ago • updated 9 days ago
hampsdiv
• 0
0
votes
2
replies
703
views
DESeq2 lfcShrink drastic shrinkage
DESeq2
updated 8 days ago by
Nick
• 0 • written 14 months ago by
theophile
• 0
0
votes
0
replies
297
views
How do I set up my DESeq analysis when I know a few vehicle control samples provide background effects we don't want to see in any of the subsequent …
DESeq2
RUVSeq
24 days ago
Simran
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirectportal.com
• 0
This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Votes
Bioconductor 3.21 is Released!
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
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