Bioconductor DESeq2

Showing : DESeq2 • reset

votes

replies

7.7k

views

deseq2 edgeR rna-seq

updated 3 hours ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

votes

replies

628

views

DESeq2

updated 4 hours ago by Michael Love 41k • written 5.0 years ago by Merlin ▴ 10

votes

views

DESeq2

updated 2 hours ago by Michael Love 41k • written 1 day ago by Brynn • 0

votes

views

DESeq2

updated 2 hours ago by Michael Love 41k • written 1 day ago by ussarizona • 0

votes

views

DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 2 hours ago by Michael Love 41k • written 8 hours ago by 09191919 • 0

votes

replies

270

views

DESeq2

updated 8 hours ago by Carlin95 • 0 • written 8 weeks ago by Emma • 0

votes

views

DESeq2

updated 2 hours ago by Michael Love 41k • written 7 hours ago by ishij9717 • 0

votes

views

DESeq2

updated 6 hours ago by ATpoint ★ 4.0k • written 1 day ago by quanah.hudson • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All

Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k