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DEXseq
•
reset
0
votes
0
replies
37
views
DEXSeq Subsetting pre or post dispersion calculation?
DEXSeq
14 days ago
Ben J
• 0
0
votes
2
replies
151
views
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
DEXSeq
7 weeks ago
Ben J
• 0
0
votes
0
replies
154
views
DESXSEQ warning (Fit for gene/exon ENSG0000002121 threw the next warning(s): the matrix is either rank-deficient or indefinite)?
DEXSeq
updated 3 months ago by
Michael Love
39k • written 4 months ago by
barrypraveen
• 0
0
votes
1
reply
219
views
plotDEXSeq error?
DEXSeq
dex
4 months ago
barrypraveen
• 0
6
votes
6
replies
378
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
5 months ago • updated 17 days ago
jeremymsimon
▴ 20
1
vote
4
replies
383
views
DEXseq batch removal
DEXSeq
updated 5 months ago by
Alejandro Reyes
★ 1.8k • written 5 months ago by
ta_awwad
▴ 10
0
votes
0
replies
121
views
DEXSeq: mcols(dxd)$fullBetaConv either contains TRUE or NA
DEXSeq
6 months ago
Matthias Munz
▴ 10
0
votes
0
replies
182
views
DEXSeq aggregated genes/exons result in NA values
RNASeq
R
DEXSeq
7 months ago
osieman52
• 0
1
vote
2
replies
294
views
DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscript out of bounds"
DEXSeq
7 months ago
Delta._.43
▴ 20
0
votes
1
reply
343
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
10 months ago
NIK
• 0
0
votes
4
replies
625
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq
DRIMSeq
updated 10 months ago by
jeroen.gilis
▴ 90 • written 10 months ago by
phoebe1354
• 0
6
votes
11
replies
1.3k
views
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
DEXSeq
updated 7 days ago by
EChambers
• 0 • written 11 months ago by
Matthew Thornton
▴ 350
3
votes
2
replies
423
views
DEX-Seq returns Error in FUN(X[[i]], ...) : subscript out of bounds when I use DEXSeqDatasetFromHTseq()
R
DEXSeq
SequenceAnnotation
RNASeqData
11 months ago • updated 10 months ago
Dakarai
▴ 10
1
vote
2
replies
1.5k
views
DEXseq error unable to find an inherited method for function NSBS for signature CompressedIntegerList
Dexseq
updated 7 months ago by
ta_awwad
▴ 10 • written 3.7 years ago by
bruce.hayward
▴ 10
0
votes
5
replies
1.3k
views
DEXSeq - counts from paired reads and unpaired singletons
dexseq
written 4.0 years ago by
maslane
• 0
1
vote
15
replies
2.4k
views
DEXSeq: Error in FUN(X[[i]], ...) : subscript out of bounds
dexseq
updated 3 months ago by
Zhuqiang
• 0 • written 5.9 years ago by
cpsosa0006
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Help with Error in DiffBind
by
Chris
• 0
Thank you for your reply! dba.count(bParallel=FALSE) Error: DBA object missing! So I try to use this: dba(DBA,mask, minOverlap=…
Answer: Access modalities in h5 files to extract expression and atac data from 10xh5
by
James W. MacDonald
62k
This support site is intended to help people with questions about Bioconductor packages, and `Signac` is not a Bioconductor package. You co…
Comment: Sudden error with KEGG analysis using gometh
by
James W. MacDonald
62k
For KEGG, yes. You previously couldn't get results, and now you can, so by definition I would expect differences. As for GO, the only chang…
Comment: Sudden error with KEGG analysis using gometh
by
pedro-marra
▴ 10
I updated the packages that generate the KEGG tables (and also GO tables) and the tables were really different from what I had previously g…
Comment: Sudden error with KEGG analysis using gometh
by
pedro-marra
▴ 10
I updated the packages that generate the KEGG tables (and also GO tables) and the tables were really different from what I had previously g…
Votes
Comment: Help with Error in DiffBind
GSVA: questions about the bootstrap p-value
Comment: Multifactorial Design for DESEQ2
Answer: Multifactorial Design for DESEQ2
Use scran's normalization by deconvolution for each individual sample or over all samples
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