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DEXseq
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0
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94
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DEXSeq plot error
DEXSeq
DEXSeqNAvalues
DEXseq
17 days ago
jean-christophe.helbling
• 0
2
votes
4
replies
336
views
DEXSeq: summarizeOverlaps() crashes Rstudio with too many samples
DEXSeq
8 weeks ago • updated 4 weeks ago
thomas.heigl.ibk
• 0
0
votes
2
replies
305
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
4 months ago
jbono
▴ 10
0
votes
1
reply
319
views
DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq
DRIMSeq
DEXSeqDataSet
columnduplication
4 months ago
NiKo
• 0
0
votes
3
replies
604
views
RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effect
DEXSeq
RNA-seq
DESeq2
updated 7 months ago by
Alejandro Reyes
★ 1.9k • written 7 months ago by
Alice
• 0
0
votes
2
replies
504
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
7 months ago • updated 6 months ago
yr542
• 0
0
votes
3
replies
687
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 7 months ago by
Hervé Pagès
16k • written 8 months ago by
anavmar1
• 0
1
vote
5
replies
774
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 8 months ago by
Alejandro Reyes
★ 1.9k • written 9 months ago by
zhangpeng1202
• 0
0
votes
0
replies
345
views
Recommendation sought for differential exon usage of a single gene
isofor
DEXSeq
DifferentialSplicing
9 months ago
nick_brittain55
• 0
0
votes
0
replies
357
views
Error while performing DEXseq
DEXSeq
10 months ago
vipul14
• 0
8
votes
7
replies
1.7k
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
updated 8 months ago by
alexandresegers
▴ 20 • written 17 months ago by
jeremymsimon
▴ 20
11 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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