Biostar DEseq

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DESeq

updated 14 hours ago by ATpoint ★ 2.0k • written 1 day ago by m-bihie • 0

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DESeq2 Transcriptomics tximport deseq txi

updated 9 days ago by Dario Strbenac ★ 1.5k • written 11 days ago by Hicham • 0

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Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert

updated 27 days ago by Gordon Smyth 47k • written 10.7 years ago by Kasper Daniel Hansen 6.5k

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Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

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Volcano Plot in R

Answer: MA plot

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