Biostar DEseq

Showing : DEseq • reset

votes

replies

815

views

convert DESeq convert DESeq

written 11.1 years ago by Akula, Nirmala NIH/NIMH [C] ▴ 190

vote

321

views

GLM prior DESeq LFC

updated 9 months ago by Michael Love 39k • written 9 months ago by stew • 0

vote

replies

665

views

deseq DESeq2

updated 10 months ago by Michael Love 39k • written 11 months ago by Amali Thrimawithana • 0

votes

replies

349

views

DESeq DESeq2

7 months ago manwar • 0

votes

550

views

deseq featurecounts counts DESeq2

updated 10 months ago by swbarnes2 ★ 1.2k • written 10 months ago by Hicham • 0

votes

replies

208

views

DESeq2 volcanoplot deseq HELP contrast

updated 27 days ago by Basti ▴ 700 • written 4 weeks ago by Michael • 0

vote

replies

482

views

DEseq RNASeqData

updated 9 months ago by ATpoint ★ 2.3k • written 9 months ago by Sanatan • 0

votes

165

views

DESeq

updated 7 weeks ago by Michael Love 39k • written 7 weeks ago by m-bihie ▴ 10

votes

165

views

DESeq2 Transcriptomics tximport deseq txi

updated 8 weeks ago by Dario Strbenac ★ 1.5k • written 9 weeks ago by Hicham • 0

votes

2.3k

views

Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert

updated 11 weeks ago by Gordon Smyth 47k • written 10.8 years ago by Kasper Daniel Hansen 6.5k

vote

211

views

DESEQ DESEQ2

updated 6 months ago by ATpoint ★ 2.3k • written 6 months ago by barrypraveen • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Hi Rory, I came up with another question while analyzing my data. A scenario of analysis: Path to bam files, path to peaks files (broad pe…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you!

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by James W. MacDonald 62k

This works for me. ``` > library(VariantAnnotation) > library(TxDb.Hsapiens.UCSC.hg19.knownGene) > txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…

Votes

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Answer: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All