Bioconductor DEseq2

Showing : DEseq2 • reset

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DESeq2

2 hours ago Nathan • 0

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150

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cnetplot DESeq2

updated 1 day ago by Guido Hooiveld ★ 4.1k • written 1 day ago by Blandine • 0

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170

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DESeq2 DifferentialExpression RNASeqData BatchEffect

2 days ago georgeyu703 • 0

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349

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DESeq2 GSEA clusterProfiler

4 days ago • updated 2 days ago Quang NN ▴ 10

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293

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limma DESeq2

written 14 days ago by jtsy6383 • 0

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358

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Transcriptomics RNASeq DESeq2

15 days ago • updated 13 days ago sindhuri • 0

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729

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DESeq2 BatchEffect

16 days ago • updated 4 days ago Quang NN ▴ 10

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287

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fishpond DESeq2 rnaseqDTU

updated 16 days ago by Michael Love 43k • written 16 days ago by muhammadsohailraza • 0

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160

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DESeq2

updated 17 days ago by swbarnes2 ★ 1.4k • written 17 days ago by natalievillafranca • 0

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349

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edgeR DESeq2

updated 20 days ago by Michael Love 43k • written 4 weeks ago by Jimmy Mak • 0

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343

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DESeq2 RNASeqData

updated 20 days ago by Michael Love 43k • written 28 days ago by KR • 0

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263

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DESeq2

26 days ago • updated 24 days ago Kucsera • 0

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1.9k

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featureCounts DESeq2

updated 18 days ago by rohitsatyam102 ▴ 20 • written 5 months ago by Bioinformagician • 0

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921

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DESeq2

written 10 months ago by Laura ▴ 10

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892

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go DESeq2

updated 15 days ago by James W. MacDonald 67k • written 16 months ago by Alvin • 0

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1.4k

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deseq2

updated 16 days ago by Michael Love 43k • written 6.6 years ago by wpoehlm • 0

16 results • Page 1 of 1

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Answer: WGCNA sample-data preprocessing order by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. …

Answer: WGCNA: Can we use high power (26) for signed network? by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Answer: Ph.D. scholar by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Comment: Recount3 data correspond to TCGA data by Fep29 • 0

Hi, This the solution to mapping TCGA ids in Recount3 to the ids used in the TCGA barcodes: library(recount3) human_projects <- …

Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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