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DEseq2
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
updated 14 hours ago by
ATpoint
★ 4.0k • written 2 days ago by
lonn
• 0
1
vote
2
replies
181
views
How to retrieve detailed regression results from deseq2
DESeq2
8 days ago • updated 3 hours ago
Weiqian
▴ 10
0
votes
4
replies
198
views
DEG with low counts
DESeq2
updated 11 hours ago by
Michael Love
41k • written 5 days ago by
Rajat
• 0
0
votes
7
replies
335
views
DESeq filtering specific to contrasts
DESeq2
updated 6 hours ago by
Michael Love
41k • written 9 weeks ago by
Emma
• 0
5
votes
14
replies
2.1k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 7 hours ago by
Seyram M.
• 0 • written 4.6 years ago by
hsbio
▴ 10
2
votes
5
replies
661
views
DESeq2 setting significant p-value
DESeq2
updated 8 hours ago by
Michael Love
41k • written 5.0 years ago by
Merlin
▴ 10
6 results • Page
1 of 1
Recent ...
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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