Bioconductor DGELIst

Showing : DGELIst • reset

vote

replies

20k

views

edgeR row.names DGEList

9.2 years ago ccheung • 0

votes

replies

6.6k

views

edger subsetting dgelist

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by mnaymik ▴ 10

votes

replies

3.2k

views

DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

votes

replies

604

views

edgeR Bioconductor Dseq2 dgelist

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Fiona • 0

vote

replies

2.0k

views

edgeR summarizedexperiment dgelist

6.0 years ago aljoscha.leusmann • 0

votes

replies

3.0k

views

egder dgelist group rnaseq

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fawazfebin ▴ 60

votes

2.2k

views

edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

votes

replies

3.6k

views

edger DGEList org.hs.eg.db gene annotation

updated 2.6 years ago by IIart.hubII • 0 • written 6.4 years ago by svlachavas ▴ 830

votes

replies

2.4k

views

edger raw reads TMM normalised values DGEList differential gene expression

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by benedict.ng ▴ 20

votes

replies

1.7k

views

dgelist edger RnaSeqGeneEdgeRQL

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by Kevin • 0

votes

replies

1.7k

views

edger DGElist

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by naser.sadri • 0

vote

828

views

factors edgeR setup DGELIst

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Alex • 0

votes

replies

views

DGEList edgeR

4 days ago prity6459 • 0

votes

replies

914

views

tree bootstrap dgelist plotmds

6.1 years ago Larry K. • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

Awards • All