Bioconductor DGEList

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20k

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edgeR row.names DGEList

9.2 years ago ccheung • 0

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6.6k

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edger subsetting dgelist

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by mnaymik ▴ 10

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3.6k

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edger DGEList org.hs.eg.db gene annotation

updated 2.6 years ago by IIart.hubII • 0 • written 6.4 years ago by svlachavas ▴ 830

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3.2k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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3.0k

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egder dgelist group rnaseq

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fawazfebin ▴ 60

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2.4k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by benedict.ng ▴ 20

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2.2k

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edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

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2.0k

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edgeR summarizedexperiment dgelist

6.0 years ago aljoscha.leusmann • 0

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1.7k

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dgelist edger RnaSeqGeneEdgeRQL

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by Kevin • 0

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1.7k

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edger DGElist

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by naser.sadri • 0

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914

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tree bootstrap dgelist plotmds

6.1 years ago Larry K. • 0

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828

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factors edgeR setup DGELIst

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Alex • 0

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604

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edgeR Bioconductor Dseq2 dgelist

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Fiona • 0

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DGEList edgeR

4 days ago prity6459 • 0

14 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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