Bioconductor DGEList

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20k

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edgeR row.names DGEList

9.2 years ago ccheung • 0

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6.6k

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edger subsetting dgelist

updated 7.7 years ago by Gordon Smyth 50k • written 7.7 years ago by mnaymik ▴ 10

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3.1k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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599

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edgeR Bioconductor Dseq2 dgelist

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Fiona • 0

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2.0k

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edgeR summarizedexperiment dgelist

6.0 years ago aljoscha.leusmann • 0

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3.0k

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egder dgelist group rnaseq

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fawazfebin ▴ 60

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2.2k

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edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

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3.6k

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edger DGEList org.hs.eg.db gene annotation

updated 2.6 years ago by IIart.hubII • 0 • written 6.4 years ago by svlachavas ▴ 830

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2.4k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by benedict.ng ▴ 20

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1.7k

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dgelist edger RnaSeqGeneEdgeRQL

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by Kevin • 0

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1.7k

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edger DGElist

updated 5.0 years ago by Gordon Smyth 50k • written 5.0 years ago by naser.sadri • 0

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824

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factors edgeR setup DGELIst

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Alex • 0

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DGEList edgeR

7 hours ago • updated 6 hours ago prity6459 • 0

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910

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tree bootstrap dgelist plotmds

6.1 years ago Larry K. • 0

14 results • Page 1 of 1

Recent ...

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up question. Following up in In your [1-2-3 article][1], you say that > "... the …

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Comment: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

Or that. ;-D

Votes

Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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