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DMRcate
•
reset
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by
Daniel E. Weeks
▴ 30
6
votes
12
replies
1.7k
views
Error when loading DMRcate
DMRcate
14 months ago
Bazingastats
• 0
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
differencial methylation
updated 2.5 years ago by
jfertaj
▴ 30 • written 3.9 years ago by
Jeni
▴ 10
3
votes
4
replies
824
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
7 months ago
Jitendra
▴ 10
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation
Epic
annotation
DMRcate
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
yoursbassanio
▴ 10
3
votes
2
replies
259
views
Question about DMRcate
DMRcate
dmrcate
12 weeks ago • updated 11 weeks ago
chuanjiao6
• 0
3
votes
4
replies
1.0k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.6 years ago by
Tim Peters
▴ 170 • written 3.6 years ago by
Jeni
▴ 10
2
votes
2
replies
1.6k
views
DMRcate error: object 'annotated' not found
dmrcate
error
updated 8.4 years ago by
Tim Peters
▴ 170 • written 8.4 years ago by
Eric Smith
• 0
2
votes
6
replies
1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 12 months ago by
Tim Peters
▴ 170 • written 12 months ago by
Grace
• 0
2
votes
18
replies
4.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.8 years ago by
574233829
• 0 • written 7.9 years ago by
Giovanni Calice
▴ 160
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter
minfi
lmer
dmrcate
dmr analysis
updated 6.0 years ago by
Tim Peters
▴ 170 • written 6.0 years ago by
Ashlynn
• 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate
R
DMRcatedata
Markdown
14 months ago
yr542
• 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate
design matrix
updated 8.4 years ago by
Tim Peters
▴ 170 • written 8.4 years ago by
Giovanni Calice
▴ 160
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 20 days ago by
Tim Peters
▴ 170 • written 5 months ago by
rae.alshammari
▴ 10
1
vote
2
replies
1.1k
views
DMRcate error in extractCoords function
software error
DMRcate
extractRanges
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.3 years ago by
Xavier Pastor
▴ 10
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
yoursbassanio
▴ 10
1
vote
8
replies
1.8k
views
extract CpGs from DMRcate results
dmrcate
cpgs
results.ranges
DMRcate
updated 3.9 years ago by
Tim Peters
▴ 170 • written 3.9 years ago by
landenshanie
▴ 40
1
vote
2
replies
1.5k
views
DMRcate extractRanges error
DMRcate
3.1 years ago
macsue.jacques
▴ 10
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.8 years ago by
Tim Peters
▴ 170 • written 7.8 years ago by
Giovanni Calice
▴ 160
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate
bumphunter
methylation
epic
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
yoursbassanio
▴ 10
1
vote
1
reply
1.4k
views
DMRcate: phenotype variable with multiple levels
dmr analysis
dmrcate
updated 8.7 years ago by
andrew.j.skelton73
▴ 370 • written 8.7 years ago by
irini.liampa
• 0
1
vote
2
replies
908
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 19 hours ago by
Tim Peters
▴ 170 • written 13 months ago by
jose.ramirez1
▴ 10
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by
Tim Peters
▴ 170 • written 7.1 years ago by
poojitha.stemcell
▴ 10
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate
dmrcate
methylation
updated 6.9 years ago by
Tim Peters
▴ 170 • written 6.9 years ago by
Ellen O
• 0
0
votes
0
replies
616
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
14 months ago
gilliangoobie
• 0
0
votes
2
replies
439
views
EPIC array hg38 annotation?
minfi
DMRcate
10 weeks ago
mycetes
• 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma
illimina 450k methylation
DMRcate
updated 9.0 years ago by
Tim Peters
▴ 170 • written 9.0 years ago by
Brian Smith
▴ 120
0
votes
5
replies
2.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.4 years ago
par.larsson
• 0
0
votes
1
reply
969
views
conflicts in chromosome number
DMRcate
updated 7.8 years ago by
Tim Peters
▴ 170 • written 7.8 years ago by
yuping.zhang
• 0
0
votes
9
replies
18k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.5 years ago by
ew17
• 0
0
votes
1
reply
973
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.3 years ago by
icobo
• 0
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate
visualization
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.3 years ago by
csugai
• 0
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate
dmr analysis
dmr
updated 7.2 years ago by
Tim Peters
▴ 170 • written 7.2 years ago by
alexandria.andrayas
▴ 10
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 12 weeks ago by
Tim Peters
▴ 170 • written 7.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ
dmrcate
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by
Yuan Tian
▴ 90 • written 6.8 years ago by
mia
• 0
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
5.8 years ago
574233829
• 0
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate
ChAMP
updated 4.7 years ago by
Yuan Tian
▴ 280 • written 4.7 years ago by
kadm
• 0
0
votes
3
replies
1.3k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.7 years ago by
Tim Peters
▴ 170 • written 4.7 years ago by
anne-kristin.stavrum
• 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.8 years ago by
yoursbassanio
▴ 10
0
votes
2
replies
783
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.7 years ago
zh9118
• 0
0
votes
0
replies
739
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.4 years ago
Mike
▴ 10
0
votes
0
replies
76
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
19 days ago
Macsue
• 0
0
votes
0
replies
122
views
What is the significance of DMR in DMRcate
DMRcate
11 weeks ago
chuanjiao6
• 0
0
votes
1
reply
885
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
jfertaj
▴ 30
0
votes
0
replies
821
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
2.4 years ago
Ahdee
▴ 50
0
votes
2
replies
943
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate
WGBS
biological_replicate
2.6 years ago
xie186
• 0
0
votes
1
reply
724
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate
DMR.plot
updated 6 months ago by
shepherl
3.8k • written 6 months ago by
Chiara
• 0
0
votes
5
replies
585
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Jitendra
▴ 10
0
votes
1
reply
464
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 8 months ago by
Tim Peters
▴ 170 • written 8 months ago by
b.curran
• 0
49 results • Page
1 of 1
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Replies
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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