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DNAMethylation
•
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0
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7
replies
233
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Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
6 days ago • updated 21 hours ago
hortense96
• 0
0
votes
0
replies
76
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
20 days ago
Macsue
• 0
0
votes
6
replies
303
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 13 days ago by
Tim Peters
▴ 170 • written 21 days ago by
s.malik
• 0
0
votes
1
reply
234
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 7 weeks ago by
belinda.phipson
▴ 40 • written 7 weeks ago by
s.malik
• 0
0
votes
4
replies
373
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 8 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
rae.alshammari
▴ 10
1
vote
4
replies
371
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 10 weeks ago by
Gordon Smyth
50k • written 11 weeks ago by
Jitendra
▴ 10
0
votes
1
reply
168
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 5 weeks ago by
Simon Pearce
• 0 • written 11 weeks ago by
User3088
• 0
1
vote
4
replies
432
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
11 weeks ago
mikat
• 0
0
votes
1
reply
483
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
12 months ago
Grace
• 0
2
votes
6
replies
1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 12 months ago by
Tim Peters
▴ 170 • written 12 months ago by
Grace
• 0
2
votes
6
replies
927
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 13 months ago by
belinda.phipson
▴ 40 • written 13 months ago by
Joana
• 0
0
votes
0
replies
530
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
20 months ago
calen.p.ryan
• 0
3
votes
8
replies
1.4k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
2.8 years ago
rtrivedi1
▴ 10
3
votes
5
replies
2.1k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 8 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
14 results • Page
1 of 1
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Replies
Comment: How to retrieve gene ontology GO class?
by
bandconductor
• 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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