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Gordon Smyth
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
•
0
Hello James,
How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴
170
Hi Jose and Russ,
Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
•
0
Sure, I changed it but still NULL
G0 <- enrichGO(
gene = ortologos_filtrados$Gene.ID,
OrgDb = org.Cs.eg.db,
keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
by
Gordon Smyth
50k
No, you cannot use residuals to compute logFCs.
From the information you give, I guess that you need to add individual-specific condition …
Comment: Error EPICv2 ChAMP
by
James W. MacDonald
65k
You don't need to do either of the above suggestions.
```
library(BiocManager)
install("YuanTian1991/ChAMPdata")
```
will install without…
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