Bioconductor DNAMethylation

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DNAMethylation ChAMP

updated 8 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

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1.0k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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483

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DNAMethylation missMethyl Pathways

12 months ago Grace • 0

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433

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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376

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 8 weeks ago by James W. MacDonald 65k • written 9 weeks ago by rae.alshammari ▴ 10

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372

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DNAMethylation limmaGUI biostatistics limma

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Jitendra ▴ 10

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303

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 13 days ago by Tim Peters ▴ 170 • written 21 days ago by s.malik • 0

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238

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DNAMethylation limma methylationArrayAnalysis

7 days ago • updated 1 day ago hortense96 • 0

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234

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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168

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 5 weeks ago by Simon Pearce • 0 • written 11 weeks ago by User3088 • 0

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DNAMethylation DMRcate

20 days ago Macsue • 0

11 results • Page 1 of 1

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Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

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Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

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