Bioconductor DNAMethylation

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294

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 9 days ago by Tim Peters ▴ 170 • written 17 days ago by s.malik • 0

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1.0k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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159

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DNAMethylation limma methylationArrayAnalysis

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by hortense96 • 0

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228

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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356

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 8 weeks ago by James W. MacDonald 65k • written 8 weeks ago by rae.alshammari ▴ 10

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2.1k

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DNAMethylation ChAMP

updated 8 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

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353

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DNAMethylation limmaGUI biostatistics limma

updated 9 weeks ago by Gordon Smyth 50k • written 10 weeks ago by Jitendra ▴ 10

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1.4k

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DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

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919

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DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

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163

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 4 weeks ago by Simon Pearce • 0 • written 10 weeks ago by User3088 • 0

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DNAMethylation DMRcate

16 days ago Macsue • 0

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482

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DNAMethylation missMethyl Pathways

11 months ago Grace • 0

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421

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

10 weeks ago mikat • 0

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523

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

14 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k