Bioconductor DNAMethylation

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268

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 5 days ago by Tim Peters ▴ 170 • written 13 days ago by s.malik • 0

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DNAMethylation DMRcate

12 days ago Macsue • 0

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156

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 4 weeks ago by Simon Pearce • 0 • written 10 weeks ago by User3088 • 0

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214

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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2.1k

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DNAMethylation ChAMP

updated 7 weeks ago by sup0903 • 0 • written 3.3 years ago by Hongbii • 0

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347

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 7 weeks ago by James W. MacDonald 65k • written 8 weeks ago by rae.alshammari ▴ 10

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343

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DNAMethylation limmaGUI biostatistics limma

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by Jitendra ▴ 10

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411

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

10 weeks ago • updated 9 weeks ago mikat • 0

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476

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DNAMethylation missMethyl Pathways

11 months ago Grace • 0

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1.0k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 11 months ago by Tim Peters ▴ 170 • written 11 months ago by Grace • 0

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915

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DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

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516

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

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1.4k

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DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

13 results • Page 1 of 1

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Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Answer: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

I'm one of the **bsseq** developers. Are you able to share one of your files with me (e.g., via Dropbox, Google Drive, OneDrive, etc.). Tha…

Comment: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var by daniel.carbajo • 0

Yeah I think this is the way to go! How can I pass `col_list` here though? `Heatmap` does not accept a list of color vectors... How can I m…

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Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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