Bioconductor DNAMethylation

Showing : DNAMethylation • reset

votes

replies

2.1k

views

DNAMethylation ChAMP

updated 9 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

votes

replies

1.4k

views

DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

votes

replies

1.1k

views

DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

votes

replies

930

views

DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

votes

replies

534

views

DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

votes

485

views

DNAMethylation missMethyl Pathways

12 months ago Grace • 0

vote

replies

441

views

DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

votes

replies

380

views

DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by rae.alshammari ▴ 10

vote

replies

379

views

DNAMethylation limmaGUI biostatistics limma

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Jitendra ▴ 10

votes

replies

307

views

DNAMethylation AnnotationHub EPICv2manifest annotation

updated 14 days ago by Tim Peters ▴ 170 • written 23 days ago by s.malik • 0

votes

replies

247

views

DNAMethylation limma methylationArrayAnalysis

8 days ago • updated 2 days ago hortense96 • 0

votes

235

views

DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

votes

171

views

DNAMethylation cfMeDIP-seq cfDNA qsea

updated 5 weeks ago by Simon Pearce • 0 • written 11 weeks ago by User3088 • 0

votes

replies

views

DNAMethylation DMRcate

21 days ago Macsue • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0