Showing : DNAMethylation • reset
3
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Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation ChAMP
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
2
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6
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1.0k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 170 • written 12 months ago by • 0
0
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1
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482
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
11 months ago Grace • 0
1
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4
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423
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
10 weeks ago mikat • 0
0
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4
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356
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Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest
updated 8 weeks ago by 65k • written 8 weeks ago by ▴ 10
1
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4
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353
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 9 weeks ago by 50k • written 10 weeks ago by ▴ 10
0
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6
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297
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 9 days ago by ▴ 170 • written 17 days ago by • 0
0
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1
reply
228
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Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 6 weeks ago by ▴ 40 • written 6 weeks ago by • 0
0
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1
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164
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Sample-specific methylation values using QSEA
DNAMethylation cfMeDIP-seq cfDNA qsea
updated 4 weeks ago by • 0 • written 10 weeks ago by • 0
0
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6
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
updated 2 days ago by 50k • written 3 days ago by • 0
0
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0
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73
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DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
16 days ago Macsue • 0
11 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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