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DNASeq
•
reset
0
votes
0
replies
651
views
Compare DNA sequence pairs and compute lengths and coordinates
DNASeq
CNEr
2.3 years ago
Md Abrar
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
0
votes
0
replies
678
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
2.7 years ago
camp
• 0
0
votes
0
replies
603
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
0
votes
0
replies
948
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
5.7 years ago
Cased
• 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
Cased
• 0
0
votes
1
reply
1.1k
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq
pathway analysis
protein
biomarkers
6.2 years ago
emadelhewihy
• 0
0
votes
1
reply
1.2k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.8 years ago
zwfanwz678
• 0
0
votes
0
replies
1.1k
views
Centipede foot printing export
footprinting
centipede
atac-seq
dnaseq
7.1 years ago
rbronste
▴ 60
0
votes
0
replies
1.2k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
7.9 years ago
arvand.akbari
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job
jobs
rnaseq
chipseq
dnaseq
Job
8.6 years ago
Rory Stark
★ 5.1k
3
votes
2
replies
1.3k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings
subsetting
View
dnastring
dnaseq
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
arado1
• 0
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r
ggbio
ggplot2
dnaseq
genomicranges
updated 8.8 years ago by
arfranco
▴ 130 • written 8.8 years ago by
fathniz
• 0
8
votes
9
replies
6.1k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
samuel collombet
▴ 140
9
votes
8
replies
8.9k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2
dnaseq
updated 9.6 years ago by
Michael Love
41k • written 9.6 years ago by
hughes.drew
▴ 100
1
vote
0
replies
1.5k
views
Bioconductor Employment: Statistical Research Associate
DNASeq
Cancer
DNASeq
Cancer
12.4 years ago
Martin Morgan
25k
16 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
Awards
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to
Bine
▴ 40
Scholar
to
ATpoint
★ 4.0k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
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