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DNAseq
•
reset
0
votes
0
replies
636
views
Compare DNA sequence pairs and compute lengths and coordinates
DNASeq
CNEr
2.3 years ago
Md Abrar
• 0
0
votes
4
replies
2.9k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.6 years ago
HELEN
• 0
0
votes
0
replies
657
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
2.6 years ago
camp
• 0
0
votes
0
replies
592
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.7 years ago
koushik
• 0
0
votes
0
replies
933
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
5.6 years ago
Cased
• 0
2
votes
3
replies
1.4k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.7 years ago by
Günter Klambauer
▴ 540 • written 5.7 years ago by
Cased
• 0
0
votes
1
reply
1.0k
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq
pathway analysis
protein
biomarkers
6.1 years ago
emadelhewihy
• 0
0
votes
1
reply
1.2k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.7 years ago
zwfanwz678
• 0
0
votes
0
replies
1.1k
views
Centipede foot printing export
footprinting
centipede
atac-seq
dnaseq
7.0 years ago
rbronste
▴ 60
0
votes
0
replies
1.2k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
7.8 years ago
arvand.akbari
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job
jobs
rnaseq
chipseq
dnaseq
Job
8.5 years ago
Rory Stark
★ 5.1k
3
votes
2
replies
1.3k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings
subsetting
View
dnastring
dnaseq
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
arado1
• 0
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r
ggbio
ggplot2
dnaseq
genomicranges
updated 8.7 years ago by
arfranco
▴ 130 • written 8.7 years ago by
fathniz
• 0
8
votes
9
replies
6.0k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.8 years ago by
Gordon Smyth
50k • written 8.9 years ago by
samuel collombet
▴ 140
9
votes
8
replies
8.9k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2
dnaseq
updated 9.5 years ago by
Michael Love
41k • written 9.5 years ago by
hughes.drew
▴ 100
1
vote
0
replies
1.5k
views
Bioconductor Employment: Statistical Research Associate
DNASeq
Cancer
DNASeq
Cancer
12.3 years ago
Martin Morgan
25k
16 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Dario Strbenac
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Ankit
▴ 20
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michael.s
• 0
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James W. MacDonald
65k
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Pierre Lindenbaum
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