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DNAstringset
•
reset
2
votes
1
reply
786
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
3
votes
4
replies
3.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
vinod.acear
▴ 50
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
2
replies
831
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.2 years ago
XIA.PAN
▴ 20
6
votes
6
replies
5.1k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.1 years ago by
Robert Stojnic
▴ 50 • written 8.1 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
vinod.acear
▴ 50
15
votes
2
replies
17k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
komal.rathi
▴ 120
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.5 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.3k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
9.0 years ago
dan.gatti
• 0
12 results • Page
1 of 1
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Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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