Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DOCKER
•
reset
0
votes
2
replies
526
views
Docker usage with Trio Bioconductor Package
VariantAnnotation
docker
trio
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
sethberke
• 0
3
votes
7
replies
1.8k
views
Installing densvis on a Singularity container
densvis
docker
updated 10 months ago by
alan.ocallaghan
▴ 160 • written 11 months ago by
James W. MacDonald
65k
2
votes
3
replies
1.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
16 months ago
jtaylor-predicine
• 0
0
votes
5
replies
1.8k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
19 months ago
Sam
▴ 10
0
votes
2
replies
1.1k
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran
docker
cran
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
mk
▴ 20
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
1
vote
7
replies
4.9k
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 20 months ago by
Sam
▴ 10 • written 3.3 years ago by
adklts
• 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Khai-Chuong
• 0
2
votes
2
replies
998
views
docker image with VariantAnnotation package?
docker
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
Paul Shannon
▴ 470
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.1 years ago
shepherl
3.8k
3
votes
1
reply
1.0k
views
Docker container with bioconductor and devtools
docker
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
raven
• 0
0
votes
0
replies
851
views
Job:
Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines
NGS
Research associate
Docker
Job
4.8 years ago
Daniel Brewer
▴ 100
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
0
votes
1
reply
1.3k
views
Error installing flowDensity on latest docker container
R
package installation
docker
updated 6.4 years ago by
shepherl
3.8k • written 6.4 years ago by
bbrink
• 0
0
votes
0
replies
1.3k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
6.5 years ago
shepherl
3.8k
1
vote
1
reply
2.0k
views
Job:
junior level position in proteomics/data science
proteomics
machine learning
git
docker
Job
updated 6.3 years ago by
karimse07
• 0 • written 6.5 years ago by
petyuk
▴ 70
2
votes
0
replies
1.0k
views
News:
Bioconductor Dockers Updated
bioconductor
docker
News
7.0 years ago
shepherl
3.8k
3
votes
0
replies
1.3k
views
News:
Updates to Bioconductor Dockers
docker
bioconductor
News
7.2 years ago
shepherl
3.8k
0
votes
1
reply
1.5k
views
apt-get problems with latest bioconductor/release_core docker
docker
7.4 years ago • updated 7.3 years ago
Karl Forner
▴ 70
0
votes
10
replies
2.0k
views
Ability to use a particular package via Docker
Docker
flowcore
dockerfile
7.6 years ago
jordan.xanthopoulos
• 0
0
votes
1
reply
1.4k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker
bioconductor
7.8 years ago
Karl Forner
▴ 70
0
votes
0
replies
1.1k
views
AnnotationData Packages version and pipeline management
docker
annotation
pipeline
7.9 years ago
Elena Grassi
▴ 10
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
1
vote
4
replies
2.4k
views
Bioconductor docker images without Rstudio-server?
docker
updated 7.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
Thomas Sandmann
▴ 90
1
vote
3
replies
1.5k
views
confused about bioconductor/release_microarray:3.2 tag
docker
microarray
8.4 years ago
Karl Forner
▴ 70
4
votes
2
replies
5.6k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
8.4 years ago
anton.kratz
▴ 60
1
vote
10
replies
2.7k
views
Building mzR package under docker fails
mzR
docker
debian
centos
rocker
8.5 years ago
mjmg
• 0
2
votes
4
replies
1.8k
views
no date tag included in docker ps output
docker
reproducibility
8.6 years ago
anton.kratz
▴ 60
3
votes
3
replies
2.9k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker
Rsamtools
8.7 years ago
Ou, Jianhong
★ 1.3k
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
8.9 years ago • updated 8.5 years ago
Karl Forner
▴ 70
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Nathan Sheffield
▴ 10
7
votes
0
replies
1.9k
views
News:
Announcing Docker containers for Bioconductor
docker
News
9.3 years ago
Dan Tenenbaum
★ 8.2k
34 results • Page
1 of 1
Recent ...
Replies
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Locations
• All
United States,
5 minutes ago
France,
10 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
United States,
23 minutes ago
Ireland,
30 minutes ago
Traffic: 640 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6