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DOCKER
•
reset
4
votes
2
replies
5.6k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
8.4 years ago
anton.kratz
▴ 60
1
vote
7
replies
4.9k
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 20 months ago by
Sam
▴ 10 • written 3.3 years ago by
adklts
• 0
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
3
votes
3
replies
2.9k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
1
vote
10
replies
2.7k
views
Building mzR package under docker fails
mzR
docker
debian
centos
rocker
8.5 years ago
mjmg
• 0
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
1
vote
4
replies
2.5k
views
Bioconductor docker images without Rstudio-server?
docker
updated 7.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
Thomas Sandmann
▴ 90
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
8.9 years ago • updated 8.5 years ago
Karl Forner
▴ 70
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Nathan Sheffield
▴ 10
0
votes
10
replies
2.0k
views
Ability to use a particular package via Docker
Docker
flowcore
dockerfile
7.6 years ago
jordan.xanthopoulos
• 0
1
vote
1
reply
2.0k
views
Job:
junior level position in proteomics/data science
proteomics
machine learning
git
docker
Job
updated 6.3 years ago by
karimse07
• 0 • written 6.6 years ago by
petyuk
▴ 70
7
votes
0
replies
1.9k
views
News:
Announcing Docker containers for Bioconductor
docker
News
9.3 years ago
Dan Tenenbaum
★ 8.2k
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker
Rsamtools
8.7 years ago
Ou, Jianhong
★ 1.3k
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Khai-Chuong
• 0
0
votes
5
replies
1.8k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
19 months ago
Sam
▴ 10
2
votes
4
replies
1.8k
views
no date tag included in docker ps output
docker
reproducibility
8.6 years ago
anton.kratz
▴ 60
3
votes
7
replies
1.8k
views
Installing densvis on a Singularity container
densvis
docker
updated 11 months ago by
alan.ocallaghan
▴ 160 • written 12 months ago by
James W. MacDonald
65k
0
votes
1
reply
1.5k
views
apt-get problems with latest bioconductor/release_core docker
docker
7.4 years ago • updated 7.3 years ago
Karl Forner
▴ 70
2
votes
3
replies
1.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
16 months ago
jtaylor-predicine
• 0
1
vote
3
replies
1.5k
views
confused about bioconductor/release_microarray:3.2 tag
docker
microarray
8.4 years ago
Karl Forner
▴ 70
0
votes
1
reply
1.4k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker
bioconductor
7.8 years ago
Karl Forner
▴ 70
0
votes
1
reply
1.3k
views
Error installing flowDensity on latest docker container
R
package installation
docker
updated 6.4 years ago by
shepherl
3.8k • written 6.4 years ago by
bbrink
• 0
0
votes
0
replies
1.3k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
6.5 years ago
shepherl
3.8k
3
votes
0
replies
1.3k
views
News:
Updates to Bioconductor Dockers
docker
bioconductor
News
7.2 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
AnnotationData Packages version and pipeline management
docker
annotation
pipeline
7.9 years ago
Elena Grassi
▴ 10
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.1 years ago
shepherl
3.8k
0
votes
2
replies
1.1k
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran
docker
cran
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
mk
▴ 20
3
votes
1
reply
1.1k
views
Docker container with bioconductor and devtools
docker
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
raven
• 0
2
votes
0
replies
1.0k
views
News:
Bioconductor Dockers Updated
bioconductor
docker
News
7.0 years ago
shepherl
3.8k
2
votes
2
replies
1000
views
docker image with VariantAnnotation package?
docker
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
Paul Shannon
▴ 470
0
votes
0
replies
856
views
Job:
Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines
NGS
Research associate
Docker
Job
4.8 years ago
Daniel Brewer
▴ 100
0
votes
2
replies
531
views
Docker usage with Trio Bioconductor Package
VariantAnnotation
docker
trio
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
sethberke
• 0
34 results • Page
1 of 1
Recent ...
Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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i.sudbery
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shepherl
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