Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DOCKER
•
reset
7
votes
0
replies
1.9k
views
News:
Announcing Docker containers for Bioconductor
docker
News
9.3 years ago
Dan Tenenbaum
★ 8.2k
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
4
votes
2
replies
5.6k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
8.4 years ago
anton.kratz
▴ 60
3
votes
1
reply
1.1k
views
Docker container with bioconductor and devtools
docker
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
raven
• 0
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
8.9 years ago • updated 8.5 years ago
Karl Forner
▴ 70
3
votes
0
replies
1.3k
views
News:
Updates to Bioconductor Dockers
docker
bioconductor
News
7.2 years ago
shepherl
3.8k
3
votes
3
replies
2.9k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Nathan Sheffield
▴ 10
3
votes
7
replies
1.8k
views
Installing densvis on a Singularity container
densvis
docker
updated 11 months ago by
alan.ocallaghan
▴ 160 • written 12 months ago by
James W. MacDonald
65k
2
votes
0
replies
1.0k
views
News:
Bioconductor Dockers Updated
bioconductor
docker
News
7.0 years ago
shepherl
3.8k
2
votes
4
replies
1.8k
views
no date tag included in docker ps output
docker
reproducibility
8.6 years ago
anton.kratz
▴ 60
2
votes
2
replies
1000
views
docker image with VariantAnnotation package?
docker
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
Paul Shannon
▴ 470
2
votes
3
replies
1.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
16 months ago
jtaylor-predicine
• 0
1
vote
3
replies
1.5k
views
confused about bioconductor/release_microarray:3.2 tag
docker
microarray
8.4 years ago
Karl Forner
▴ 70
1
vote
10
replies
2.7k
views
Building mzR package under docker fails
mzR
docker
debian
centos
rocker
8.5 years ago
mjmg
• 0
1
vote
4
replies
2.5k
views
Bioconductor docker images without Rstudio-server?
docker
updated 7.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
Thomas Sandmann
▴ 90
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker
Rsamtools
8.7 years ago
Ou, Jianhong
★ 1.3k
1
vote
1
reply
2.0k
views
Job:
junior level position in proteomics/data science
proteomics
machine learning
git
docker
Job
updated 6.3 years ago by
karimse07
• 0 • written 6.6 years ago by
petyuk
▴ 70
1
vote
7
replies
4.9k
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 20 months ago by
Sam
▴ 10 • written 3.3 years ago by
adklts
• 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Khai-Chuong
• 0
0
votes
2
replies
531
views
Docker usage with Trio Bioconductor Package
VariantAnnotation
docker
trio
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
sethberke
• 0
0
votes
5
replies
1.8k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
19 months ago
Sam
▴ 10
0
votes
2
replies
1.1k
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran
docker
cran
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
mk
▴ 20
0
votes
10
replies
2.0k
views
Ability to use a particular package via Docker
Docker
flowcore
dockerfile
7.6 years ago
jordan.xanthopoulos
• 0
0
votes
1
reply
1.4k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker
bioconductor
7.8 years ago
Karl Forner
▴ 70
0
votes
1
reply
1.5k
views
apt-get problems with latest bioconductor/release_core docker
docker
7.4 years ago • updated 7.3 years ago
Karl Forner
▴ 70
0
votes
0
replies
1.1k
views
AnnotationData Packages version and pipeline management
docker
annotation
pipeline
7.9 years ago
Elena Grassi
▴ 10
0
votes
0
replies
1.3k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
6.5 years ago
shepherl
3.8k
0
votes
1
reply
1.3k
views
Error installing flowDensity on latest docker container
R
package installation
docker
updated 6.4 years ago by
shepherl
3.8k • written 6.4 years ago by
bbrink
• 0
0
votes
0
replies
854
views
Job:
Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines
NGS
Research associate
Docker
Job
4.8 years ago
Daniel Brewer
▴ 100
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.1 years ago
shepherl
3.8k
34 results • Page
1 of 1
Recent ...
Replies
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
Awards
• All
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Scholar
to
Gordon Smyth
50k
Popular Question
to
taur.vil
• 0
Locations
• All
Switzerland,
3 minutes ago
France,
8 minutes ago
Turkey,
10 minutes ago
United States,
11 minutes ago
United States,
11 minutes ago
Traffic: 743 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6