Showing : DRIMSeq • reset
2
votes
9
replies
2.2k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq stageR dtu salmon rna seq
updated 6.7 years ago by ▴ 180 • written 6.7 years ago by ▴ 60
0
votes
4
replies
2.2k
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq DRIMSeq
updated 2.8 years ago by ▴ 90 • written 2.9 years ago by • 0
2
votes
4
replies
2.0k
views
stageR: Error in stageWiseAdjustment
stageR rnaseqDTU DRIMSeq DEXSeq
6.2 years ago d-joester ▴ 20
0
votes
11
replies
2.0k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU DRIMseq DEXseq rna-seq
6.0 years ago saddamhusain77 • 0
0
votes
5
replies
1.9k
views
Error using DRIMSeq with Salmon count data
DRIMSeq tximport txdb Salmon
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
votes
4
replies
1.8k
views
DRIMSeq continious variable in design matrix - Error during precision estimation
DRIMSeq dmPrecision
updated 2.1 years ago by • 0 • written 6.1 years ago by ▴ 60
1
vote
2
replies
1.8k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq splicing differential isoform usage
updated 8.2 years ago by ▴ 90 • written 8.2 years ago by ▴ 20
1
vote
2
replies
1.8k
views
Normalized transcript/exon counts for network analysis
drimseq dexseq wgcna sva
updated 6.1 years ago by ▴ 90 • written 6.1 years ago by ▴ 30
4
votes
3
replies
1.8k
views
DEXSeq and DRIMSeq on paired samples?
DRIMSeq DEXSeq
updated 6.5 years ago by ▴ 90 • written 6.5 years ago by • 0
0
votes
5
replies
1.7k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq DRIMSeq DEXSeq rnaseqDTU
3.6 years ago bioinformatic_trainee ▴ 10
3
votes
4
replies
1.6k
views
DRIMSeq: many NAs in results compared to DESeq2 ?
DESeq2 DRIMSeq dtu RNASeq
3.7 years ago sbcn ▴ 80
1
vote
1
reply
1.5k
views
DrimSeq: installation versions
drimseq DTU
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 10
0
votes
5
replies
1.4k
views
DRIMSeq with technical replicates
DRIMSeq R DTU technical replicates deseq2
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
2
votes
2
replies
1.4k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU DRIMSeq rnaseqDTU
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 60
0
votes
3
replies
1.3k
views
Post-hoc filtering on the standard deviation in proportions
drimseq rnaseqdtu stager
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
0
votes
2
replies
1.3k
views
DRIMSeq + dmFilter
DEXSeq DRIMSeq
4.0 years ago Gaia • 0
0
votes
0
replies
1.1k
views
Error generating counts df for use with DRIMSeq/DEXseq
DRIMSeq DEXSeq
4.0 years ago jbono ▴ 10
0
votes
1
reply
1.1k
views
stageR with input from DRIMSeq
DRIMSeq stageR
updated 6.0 years ago by ▴ 180 • written 6.1 years ago by • 0
1
vote
1
reply
1.1k
views
Error in dmTest() from DRIMSeq package - tuQTL
DRIMSeq tuQTL
updated 4.6 years ago by ▴ 90 • written 4.7 years ago by • 0
1
vote
1
reply
1.0k
views
DEXSeq-DTU normalisation suggestion - scaledTPM vs dtuScaledTPM
tximport DEXSeq-DTU DRIMSeq
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
0
votes
3
replies
1.0k
views
DRIMseq error for paired sample analysis
DRIMSeq
24 months ago Luca • 0
2
votes
2
replies
980
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU DRIMSeq
2.7 years ago wangziwei0010 ▴ 10
1
vote
1
reply
973
views
Calling a package specific function in a for loop
drimseq swimming downstream for loop sapply
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
votes
0
replies
894
views
Subset samples expressing genes for DEXSeq or DRIMSeq analysis
DEXSeq DRIMSeq
4.9 years ago alexis.weinreb • 0
1
vote
1
reply
733
views
DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq DRIMSeq DEXSeqDataSet columnduplication
17 months ago NiKo ▴ 10
0
votes
0
replies
616
views
Estimating factors of unwanted variation for DTU analysis
RUVSeq DRIMSeq
24 months ago Luca • 0
26 results • Page 1 of 1
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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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