Bioconductor DSS

Showing : DSS • reset

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2.1k

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DSS bsseq summarizedexperiment

8.6 years ago Tim Peters ▴ 170

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2.0k

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dss

8.1 years ago • updated 8.0 years ago kafkaskid ▴ 20

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1.4k

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limma DSS limma DSS

updated 10.2 years ago by James W. MacDonald 65k • written 10.2 years ago by Sabet, Julia A ▴ 180

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DSS DSS

updated 13.1 years ago by Ina Hoeschele ▴ 620 • written 13.1 years ago by Prasad Siddavatam ▴ 150

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1.7k

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RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS

updated 11.1 years ago by Ryan C. Thompson ★ 7.9k • written 11.1 years ago by Richard Friedman ★ 2.0k

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1.3k

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dmrseq sva DSS

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by gjl ▴ 10

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717

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DSS DSS-single bsseq

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by varunorama • 0

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1.0k

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DSS

3.4 years ago vi.hammer • 0

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2.6k

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methylationArrayAnalysis ChAMP DMP DSS

updated 18 months ago by James W. MacDonald 65k • written 23 months ago by 16301050225 • 0

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219

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dss DSS

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by chuanjiao6 • 0

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723

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DSS methylation

4.6 years ago CalM • 0

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1.2k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

2.2 years ago Jojo • 0

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874

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DSS bug troubleshooting callDMR

4.4 years ago matthew.kearney • 0

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719

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DSS BSSeq

4.1 years ago stephanie.rialle • 0

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950

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DSS DMRcaller

updated 11 months ago by Noelia • 0 • written 21 months ago by Claire • 0

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694

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DSS

2.7 years ago cer.chloe ▴ 30

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1.0k

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DSS

7.7 years ago aerval • 0

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1.3k

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DSS WGBS coverage

6.5 years ago floriandeckert ▴ 30

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864

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DSS DMLtest

6.1 years ago floriandeckert ▴ 30

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1.2k

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DSS dmltest bayesian statistics methylation

6.0 years ago floriandeckert ▴ 30

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484

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DSS

12 months ago Weisheng • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0