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Database
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
3.1 years ago
tpm
• 0
0
votes
3
replies
1.3k
views
error while making database using Annotationforge package
annotationforge
error
database
updated 7.8 years ago by
Guido Hooiveld
★ 3.9k • written 7.8 years ago by
kritikamish99
▴ 10
1
vote
1
reply
470
views
can i get the database of bioconductor?
database
4.6 years ago
jsdh120707
• 0
2
votes
1
reply
1.2k
views
Update database names in the biomaRT package
biomaRT
database
updated 9.2 years ago by
Julian Gehring
★ 1.3k • written 9.2 years ago by
aspadotto
▴ 20
0
votes
0
replies
884
views
setting database.path for extracting PSSM Feature in BioSeqClass
bioseqclass
pssm
database
featurepssm
feature
8.6 years ago
greensandag
• 0
0
votes
0
replies
1.1k
views
Job:
Computational Biology/Bioinformatics Post-doctoral position, Johns Hopkins University, Baltimore, USA
rnaseq
next-generation sequencing
database
Job
6.4 years ago
cleo.k.yang
• 0
0
votes
0
replies
459
views
Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein
database
glutathionylation
PTM
2.8 years ago
Camelia
• 0
7 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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