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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
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Carlin95
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Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
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Jonathan
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Thank you for your answer; However, I have some follow-up questions.
Following up in In your [1-2-3 article][1], you say that
> "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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Seyram M.
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Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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isaac.vock
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Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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