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878
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684
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10
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4.6 years ago
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1.7k
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1.9k
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written 6.2 years ago by
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150
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1.6k
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150
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150
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10
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40
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955
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10
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3
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2.7k
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20
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1.8k
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Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★
4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
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0
Thank you for your comment!
1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right?
Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
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★
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IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
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I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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