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Decipher
•
reset
0
votes
21
replies
2.8k
views
How to use DECIPHER to design group-specific primers
Decipher
4.0 years ago
hoonhuiyi
• 0
5
votes
7
replies
1.6k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 6.3 years ago by
Erik Wright
▴ 150 • written 6.3 years ago by
reubenmcgregor88
• 0
1
vote
6
replies
1.8k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
3.6 years ago
sebastian.mynott
• 0
0
votes
5
replies
1.4k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 2.9 years ago by
Erik Wright
▴ 150 • written 2.9 years ago by
curiousmind007
▴ 10
0
votes
5
replies
1.7k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.1 years ago by
Erik Wright
▴ 150 • written 4.0 years ago by
hoonhuiyi
• 0
0
votes
5
replies
2.2k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.9 years ago by
fabian.roger08
▴ 10 • written 4.2 years ago by
fabian.roger
• 0
1
vote
5
replies
1.5k
views
DECIPHER version bug using biocLite()
DECIPHER
7.9 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
5
replies
1.8k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
6.9 years ago
bbista91
▴ 10
0
votes
5
replies
3.8k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 4.0 years ago by
shepherl
3.8k • written 4.0 years ago by
hoonhuiyi
• 0
2
votes
5
replies
1.6k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 6.3 years ago by
Erik Wright
▴ 150 • written 6.3 years ago by
reubenmcgregor88
• 0
3
votes
5
replies
1.6k
views
Error: 'IdClusters'
DECIPHER
updated 10 months ago by
Ling-Hsiu
▴ 10 • written 14 months ago by
julieta.micorriza
• 0
2
votes
4
replies
1.7k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
6.0 years ago
reubenmcgregor88
• 0
0
votes
4
replies
1.3k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
2.7k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 8.3 years ago by
Smeeta Shrestha
▴ 20 • written 21.0 years ago by
Park, Richard
▴ 220
2
votes
3
replies
1.8k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 6.3 years ago by
Erik Wright
▴ 150 • written 6.3 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.2k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.3 years ago by
Erik Wright
▴ 150 • written 6.3 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
3
replies
1.6k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.6 years ago by
UBodenhofer
▴ 290 • written 3.6 years ago by
matamunee
• 0
0
votes
3
replies
674
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 9 months ago by
Erik Wright
▴ 150 • written 9 months ago by
Till
▴ 30
0
votes
3
replies
1.2k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 2.6 years ago by
slwmartin
• 0 • written 2.6 years ago by
Mailys
• 0
0
votes
3
replies
1.0k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 16 months ago by
Erik Wright
▴ 150 • written 16 months ago by
Nelli
• 0
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.6 years ago by
Erik Wright
▴ 150 • written 4.6 years ago by
lauren.fitch
• 0
0
votes
2
replies
1.0k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
6.3 years ago
reubenmcgregor88
• 0
0
votes
2
replies
877
views
how to design probes using decipher
R
decipher
4.0 years ago
hoonhuiyi
• 0
0
votes
2
replies
866
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.9 years ago by
joannew
• 0
2
votes
2
replies
1.9k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
768
views
insufficient alignment
DECIPHER
Alignment
3.4 years ago
julius_vn
• 0
0
votes
1
reply
1.6k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
6.5 years ago
c.l.frankling
• 0
0
votes
1
reply
710
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
4.6 years ago
marissaruthlee
• 0
0
votes
1
reply
891
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.3 years ago by
Erik Wright
▴ 150 • written 4.3 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
952
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.0 years ago by
Erik Wright
▴ 10 • written 8.0 years ago by
rob.lanfear
• 0
0
votes
1
reply
1.1k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 13.7 years ago by
Marc Carlson
★ 7.2k • written 13.7 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 13.9 years ago by
Benilton Carvalho
★ 4.3k • written 13.9 years ago by
jos matejus
▴ 40
0
votes
1
reply
823
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 3.2 years ago by
Erik Wright
▴ 150 • written 3.2 years ago by
noeliaruizalonso23
• 0
0
votes
1
reply
764
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 2.8 years ago by
Erik Wright
▴ 150 • written 2.8 years ago by
tkirkland
• 0
0
votes
1
reply
1.2k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 6.5 years ago by
Erik Wright
▴ 10 • written 6.5 years ago by
emma.berdan
• 0
0
votes
1
reply
667
views
OligoArrayAux fails to compile
DECIPHER
17 months ago
fabian.roger08
▴ 10
0
votes
0
replies
97
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
7 days ago
Eryn
• 0
0
votes
0
replies
630
views
Alignment larger than the maximum allowable size
DECIPHER
updated 4.8 years ago by
shepherl
3.8k • written 4.8 years ago by
cmasembe
• 0
0
votes
0
replies
1.5k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.1 years ago
Radek Blatny
▴ 60
0
votes
0
replies
364
views
Updating 16S training set with LearnTaxa
DECIPHER
16 months ago
Connor
• 0
0
votes
0
replies
1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
13.9 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.7k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
14.8 years ago
Joern Toedling
▴ 450
0
votes
0
replies
750
views
DECIPHER Probe Design Questions
DECIPHER
3.4 years ago
henry1995910343
• 0
0
votes
0
replies
1.5k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.1 years ago
Kathi Zarnack
▴ 110
0
votes
0
replies
941
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
45 results • Page
1 of 1
Recent ...
Replies
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Hi, Thank you very much for your answer. It's true that I only used 6 samples for this analysis, which is consistent with your explanation…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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