Showing : Decipher • reset
0
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5
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3.8k
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
0
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21
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2.8k
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How to use DECIPHER to design group-specific primers
Decipher
4.0 years ago hoonhuiyi • 0
0
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3
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2.7k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.0 years ago by ▴ 220
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5
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2.2k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 2.9 years ago by ▴ 10 • written 4.2 years ago by • 0
2
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2
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1.9k
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How to combine sequences from different stringsets?
biostrings decipher
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
2
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5
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1.8k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
6.9 years ago bbista91 ▴ 10
1
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6
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1.8k
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
3.6 years ago sebastian.mynott • 0
0
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1
reply
1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 40
2
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3
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1.8k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
0
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5
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1.7k
views
Program not properly installed/program not accessible by system
R decipher
updated 3.1 years ago by ▴ 150 • written 4.0 years ago by • 0
2
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4
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1.7k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
6.0 years ago reubenmcgregor88 • 0
0
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0
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1.7k
views
Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
0
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3
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1.6k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 3.6 years ago by ▴ 290 • written 3.6 years ago by • 0
3
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5
replies
1.6k
views
Error: 'IdClusters'
DECIPHER
updated 11 months ago by ▴ 10 • written 14 months ago by • 0
5
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7
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1.6k
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
0
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1
reply
1.6k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
6.5 years ago c.l.frankling • 0
2
votes
5
replies
1.6k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
1
vote
5
replies
1.5k
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DECIPHER version bug using biocLite()
DECIPHER
7.9 years ago Vinicius Henrique da Silva ▴ 40
0
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0
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1.5k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
10.1 years ago Kathi Zarnack ▴ 110
0
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0
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1.5k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
14.1 years ago Radek Blatny ▴ 60
0
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5
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1.4k
views
DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 2.9 years ago by ▴ 150 • written 2.9 years ago by ▴ 10
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 4.6 years ago by ▴ 150 • written 4.6 years ago by • 0
0
votes
4
replies
1.3k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 890
0
votes
1
reply
1.2k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 6.5 years ago by ▴ 10 • written 6.5 years ago by • 0
0
votes
3
replies
1.2k
views
Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
1
vote
3
replies
1.2k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by ▴ 40
0
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0
replies
1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
13.9 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
1.1k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 40
0
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2
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1.0k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
6.3 years ago reubenmcgregor88 • 0
0
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3
replies
1.0k
views
Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 16 months ago by ▴ 150 • written 16 months ago by • 0
0
votes
1
reply
953
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by • 0
0
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0
replies
943
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3.0 years ago anrongloh • 0
0
votes
1
reply
893
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.3 years ago by ▴ 150 • written 4.3 years ago by ▴ 10
0
votes
2
replies
884
views
how to design probes using decipher
R decipher
4.0 years ago hoonhuiyi • 0
0
votes
2
replies
867
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 3.9 years ago by • 0
0
votes
1
reply
827
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
0
votes
2
replies
772
views
insufficient alignment
DECIPHER Alignment
3.4 years ago julius_vn • 0
0
votes
1
reply
767
views
ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 2.9 years ago by ▴ 150 • written 2.9 years ago by • 0
0
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0
replies
752
views
DECIPHER Probe Design Questions
DECIPHER
3.4 years ago henry1995910343 • 0
0
votes
1
reply
711
views
PCR simulation with PNAs
PCR DECIPHER PNA
4.6 years ago marissaruthlee • 0
0
votes
3
replies
678
views
DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 9 months ago by ▴ 150 • written 9 months ago by ▴ 30
0
votes
1
reply
669
views
OligoArrayAux fails to compile
DECIPHER
17 months ago fabian.roger08 ▴ 10
0
votes
0
replies
631
views
Alignment larger than the maximum allowable size
DECIPHER
updated 4.8 years ago by 3.8k • written 4.8 years ago by • 0
0
votes
0
replies
365
views
Updating 16S training set with LearnTaxa
DECIPHER
16 months ago Connor • 0
0
votes
0
replies
102
views
LearnTaxa with custom Silva
DECIPHER LearnTaxa
9 days ago Eryn • 0
45 results • Page 1 of 1
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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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