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DeconRNASeq
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Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq
AnnotationDbi
org.Hs.eg.db
20 months ago
chunglee13
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3
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Limma model.matrix design with batch effect and different life stages proportion estimates
DeconRNASeq
limma
updated 21 months ago by
Masongeorge
• 0 • written 21 months ago by
ij283
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2 results • Page
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Answer: specifying refColumn in calcNormFactors()
by
Gordon Smyth
53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2
by
Tim Peters
▴ 230
Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2
by
dani.guan.3
• 0
Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2
by
Michael Love
43k
> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…
Answer: Is it still possible to do batch correction for my data?
by
James W. MacDonald
68k
The balance doesn't matter. What does matter is that you have samples nested in batch, in which case you cannot reliably distinguish techni…
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DiffBind dropping peaks in ATAC-seq data
A: decideTests() options in LIMMA
A: Removing cell cycle genes in large data set integration
A: Removing cell cycle genes in large data set integration
Answer: Quick two questions on limpa
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