Showing : Deconvolution • reset
2
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2
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1.2k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
0
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0
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917
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Best deconvolution method
Deconvolution
2.4 years ago Barista • 0
0
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1
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652
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
3.9 years ago kavator ▴ 30
0
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0
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871
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.0 years ago marcin.bazyliszek • 0
0
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2
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735
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
0
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4
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1.3k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 30
0
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2
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1.1k
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 deconvolution rnaseq
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
0
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0
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899
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
6.2 years ago casey.rimland ▴ 150
1
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1
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1.0k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
6.2 years ago WouterDeCoster ▴ 130
0
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1
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2.2k
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 150
0
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0
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1.6k
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
8.9 years ago carleshf ▴ 10
11 results • Page 1 of 1
Recent ...
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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