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Deconvolution
•
reset
2
votes
2
replies
1.1k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.1 years ago
Hasan Alanya
• 0
0
votes
0
replies
880
views
Best deconvolution method
Deconvolution
2.3 years ago
Barista
• 0
0
votes
1
reply
629
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
3.8 years ago
kavator
▴ 30
0
votes
0
replies
835
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
3.9 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
706
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
antgomo
• 0
0
votes
4
replies
1.3k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.1k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
jennyl.smith12
• 0
0
votes
0
replies
875
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.1 years ago
casey.rimland
▴ 150
1
vote
1
reply
985
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.1 years ago
WouterDeCoster
▴ 130
0
votes
1
reply
2.1k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 8.4 years ago by
Steve Lianoglou
★ 13k • written 8.4 years ago by
Pauly Lin
▴ 150
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.8 years ago
carleshf
▴ 10
11 results • Page
1 of 1
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
If you include `0+` in the model formula, then the order of the batch and treatment factors in the model becomes important. You need `0+gro…
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
James W. MacDonald
65k
The main goal here is to map human gene symbols to something else, which you can use the `Orthology.eg.db` package to do. You could also us…
Comment: How can I compute AIC for MAST hurdle model fitted in the whole dataset?
by
rproendo
▴ 20
Hi OP, checking in to see if you found a solution to this issue. I'm also interested in using AICs to evaluate model fits in MAST.
Comment: padj-based gradient scale from barplot (clusterProfiler results) does not work p
by
Eva
▴ 10
Oh god, it is right, how I didn't realise before. I got confused with the scientific format of the numbers and I was in a loop for nothing.…
Comment: Downloading count matrix for full recount3 dataset
by
Leonardo Collado Torres
★ 1.0k
AFAIK it's not.
Votes
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
DESeq2 design with multiple factors
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Wolfgang RAFFELSBERGER
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Dario Strbenac
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