Showing : Deconvolution • reset
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 150
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 deconvolution rnaseq
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
2
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1.2k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
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4
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1.3k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 30
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1.6k
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
8.9 years ago carleshf ▴ 10
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916
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Best deconvolution method
Deconvolution
2.4 years ago Barista • 0
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1.0k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
6.2 years ago WouterDeCoster ▴ 130
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
6.2 years ago casey.rimland ▴ 150
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869
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.0 years ago marcin.bazyliszek • 0
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651
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
3.9 years ago kavator ▴ 30
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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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