Bioconductor Deconvolution

Showing : Deconvolution • reset

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1.2k

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deconvolution r scRNAseq bioinformatics

2.2 years ago Hasan Alanya • 0

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913

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Deconvolution

2.4 years ago Barista • 0

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651

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PSEA Deconvolution

3.8 years ago kavator ▴ 30

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868

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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730

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limma microarray deconvolution cell type

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by antgomo • 0

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1.3k

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deseq2 deconvolution normalization limma

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by bruce.moran ▴ 30

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1.1k

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deseq2 deconvolution rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by jennyl.smith12 • 0

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896

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deconvolution methods

6.2 years ago casey.rimland ▴ 150

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1.0k

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deconvolution rnaseq psea

6.2 years ago WouterDeCoster ▴ 130

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2.2k

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deconvolution rna-seq

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by Pauly Lin ▴ 150

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1.6k

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deconvolution cellmix

8.9 years ago carleshf ▴ 10

11 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

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Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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