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Deconvolution
•
reset
2
votes
2
replies
1.2k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.2 years ago
Hasan Alanya
• 0
0
votes
0
replies
917
views
Best deconvolution method
Deconvolution
2.4 years ago
Barista
• 0
0
votes
1
reply
652
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
3.9 years ago
kavator
▴ 30
0
votes
0
replies
871
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.0 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
734
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
antgomo
• 0
0
votes
4
replies
1.3k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.1k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
jennyl.smith12
• 0
0
votes
0
replies
898
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.2 years ago
casey.rimland
▴ 150
1
vote
1
reply
1.0k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.2 years ago
WouterDeCoster
▴ 130
0
votes
1
reply
2.2k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
Pauly Lin
▴ 150
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.9 years ago
carleshf
▴ 10
11 results • Page
1 of 1
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Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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