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Deconvolution
•
reset
2
votes
2
replies
263
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
3 months ago
Hasan Alanya
• 0
0
votes
0
replies
232
views
Best deconvolution method
Deconvolution
6 months ago
Barista
• 0
0
votes
1
reply
238
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
23 months ago
kavator
▴ 20
0
votes
0
replies
322
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
2.1 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
258
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 2.3 years ago by
Gordon Smyth
45k • written 2.3 years ago by
antgomo
• 0
0
votes
4
replies
742
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
bruce.moran
▴ 30
0
votes
2
replies
496
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 3.9 years ago by
Michael Love
37k • written 3.9 years ago by
jennyl.smith12
• 0
0
votes
0
replies
449
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
4.3 years ago
casey.rimland
▴ 140
1
vote
1
reply
572
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
4.3 years ago
WouterDeCoster
▴ 130
0
votes
1
reply
1.5k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 6.6 years ago by
Steve Lianoglou
13k • written 6.6 years ago by
Pauly Lin
▴ 120
0
votes
0
replies
1.2k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
7.0 years ago
carleshf
▴ 10
11 results • Page
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Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq
by
Jess
• 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue
by
shepherl
3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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Aaron Lun
★ 27k
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