Bioconductor Deconvolution

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1.2k

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deconvolution r scRNAseq bioinformatics

2.2 years ago Hasan Alanya • 0

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914

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Deconvolution

2.4 years ago Barista • 0

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651

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PSEA Deconvolution

3.8 years ago kavator ▴ 30

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868

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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731

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limma microarray deconvolution cell type

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by antgomo • 0

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1.3k

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deseq2 deconvolution normalization limma

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by bruce.moran ▴ 30

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1.1k

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deseq2 deconvolution rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by jennyl.smith12 • 0

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897

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deconvolution methods

6.2 years ago casey.rimland ▴ 150

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1.0k

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deconvolution rnaseq psea

6.2 years ago WouterDeCoster ▴ 130

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2.2k

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deconvolution rna-seq

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by Pauly Lin ▴ 150

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1.6k

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deconvolution cellmix

8.9 years ago carleshf ▴ 10

11 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k