Showing : Deprecation • reset
3
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18
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2.8k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
9 months ago • updated 1 day ago shepherl 3.8k
0
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2
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836
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News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
12 months ago • updated 10 months ago shepherl 3.8k
1
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8
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1.5k
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
0
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2
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729
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News: List of Deprecated Packages for Bioc3.16
Release Deprecation Devel Bioconductor
18 months ago • updated 17 months ago shepherl 3.8k
0
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0
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673
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Running deprecated packages
ToPASeq Deprecation
24 months ago pgauthi1 • 0
0
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4
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1.1k
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News: List of Deprecated Packages for Bioc3.15
Devel Deprecation Release Bioconductor
2.1 years ago • updated 18 months ago shepherl 3.8k
0
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5
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1.3k
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News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.5 years ago • updated 24 months ago shepherl 3.8k
2
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2
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1.5k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
3.4 years ago • updated 2.9 years ago shepherl 3.8k
0
votes
3
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1.0k
views
Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation chipseq htseqtools Bioconductor
updated 3.1 years ago by ▴ 770 • written 3.1 years ago by • 0
0
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0
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755
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.1 years ago shepherl 3.8k
0
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1
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838
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.3 years ago shepherl 3.8k
0
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0
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865
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.4 years ago shepherl 3.8k
0
votes
2
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1.6k
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.5 years ago • updated 4.4 years ago shepherl 3.8k
0
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0
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837
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.6 years ago • updated 4.5 years ago shepherl 3.8k
0
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1
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1.0k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
4.7 years ago • updated 4.6 years ago shepherl 3.8k
0
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3
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1.0k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.9 years ago shepherl 3.8k
0
votes
1
reply
847
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
4.9 years ago shepherl 3.8k
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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