Bioconductor Deseq

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DESeq2 deseq

7 weeks ago Meme • 0

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317

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deseq DESeq2

updated 4 months ago by ATpoint ★ 4.0k • written 4 months ago by Hugo • 0

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496

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deseq DESeq2

5 months ago • updated 4 months ago georgii.vdovin • 0

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359

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Deseq DESeq2

updated 5 months ago by Michael Love 41k • written 5 months ago by georgii.vdovin • 0

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621

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Z-score RNASeqData Deseq DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by khaserdene99 • 0

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810

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DESeq DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Abir.khazaal ▴ 10

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613

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 9 months ago by Michael Love 41k • written 9 months ago by Ndimensional ▴ 20

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596

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DESeq2 deseq txime tximeta

updated 12 months ago by Michael Love 41k • written 12 months ago by akrunic • 0

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5.5k

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ERROR: configuration failed for package ‘RCurl’ DESeq

written 4.0 years ago by krunal.24.6 ▴ 10

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26k

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deseq deseq2

updated 8 months ago by Erika • 0 • written 9.2 years ago by c.lieftink@nki.nl ▴ 40

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Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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