Bioconductor Deseq

Showing : Deseq • reset

votes

replies

319

views

deseq DESeq2

updated 4 months ago by ATpoint ★ 4.0k • written 4 months ago by Hugo • 0

votes

replies

5.5k

views

ERROR: configuration failed for package ‘RCurl’ DESeq

written 4.0 years ago by krunal.24.6 ▴ 10

votes

replies

837

views

DESeq DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Abir.khazaal ▴ 10

votes

626

views

Z-score RNASeqData Deseq DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by khaserdene99 • 0

votes

replies

501

views

deseq DESeq2

5 months ago georgii.vdovin • 0

vote

replies

289

views

DESeq2 deseq

8 weeks ago Meme • 0

votes

replies

618

views

DESeq2 apeglm DESeq ApeGLM Ashr

updated 9 months ago by Michael Love 41k • written 9 months ago by Ndimensional ▴ 20

votes

replies

26k

views

deseq deseq2

updated 8 months ago by Erika • 0 • written 9.2 years ago by c.lieftink@nki.nl ▴ 40

votes

363

views

Deseq DESeq2

updated 5 months ago by Michael Love 41k • written 5 months ago by georgii.vdovin • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All

Popular Question to James W. MacDonald 65k