Bioconductor Deseq2

Showing : Deseq2 • reset

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deseq2

updated 3 hours ago by Seyram M. • 0 • written 4.6 years ago by hsbio ▴ 10

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deseq2 edgeR rna-seq

updated 1 day ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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325

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DESeq2

updated 2 hours ago by Michael Love 41k • written 9 weeks ago by Emma • 0

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BatchEffect RNASeqData WGCNA DESeq2

updated 2 days ago by Ashley • 0 • written 10 months ago by zxc741xb • 0

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659

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DESeq2

updated 4 hours ago by Michael Love 41k • written 5.0 years ago by Merlin ▴ 10

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193

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DESeq2

updated 7 hours ago by Michael Love 41k • written 4 days ago by Rajat • 0

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DESeq2 BatchEffect sva limma

updated 3 days ago by Michael Love 41k • written 5 months ago by Crystal571 • 0

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140

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DESeq2

updated 3 days ago by Michael Love 41k • written 4 days ago by andrebolerbarros ▴ 20

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107

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DiffBind DESeq2 ATACSeq

updated 11 hours ago by ATpoint ★ 4.0k • written 2 days ago by lonn • 0

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DESeq2

7 days ago • updated 6 days ago hemantcnaik • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 1 day ago by Michael Love 41k • written 1 day ago by 09191919 • 0

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DESeq2

updated 1 day ago by Michael Love 41k • written 1 day ago by ishij9717 • 0

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DESeq2

updated 1 day ago by Michael Love 41k • written 2 days ago by ussarizona • 0

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DESeq2

updated 1 day ago by Michael Love 41k • written 2 days ago by Brynn • 0

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DESeq2

updated 1 day ago by ATpoint ★ 4.0k • written 2 days ago by quanah.hudson • 0

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160

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DESeq2

updated 4 days ago by Michael Love 41k • written 8 days ago by Weiqian ▴ 10

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DESeq2

updated 4 days ago by ATpoint ★ 4.0k • written 5 days ago by Sahar • 0

17 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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