Bioconductor Deseq2

Showing : Deseq2 • reset

votes

152

views

DESeq2

updated 22 hours ago by Michael Love 41k • written 1 day ago by i.sudbery ▴ 40

votes

replies

119

views

DESeq2 RSTUDIO PCAtools

updated 7 hours ago by swbarnes2 ★ 1.3k • written 1 day ago by Aaliya • 0

vote

replies

views

DESeq2

updated 12 hours ago by Michael Love 41k • written 16 hours ago by andrebolerbarros ▴ 20

votes

views

DESeq2

updated 7 hours ago by swbarnes2 ★ 1.3k • written 16 hours ago by winwater0928 • 0

votes

views

DESeq2 RNAseq

updated 3 hours ago by Michael Love 41k • written 7 hours ago by kcarey • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Awards • All

Teacher to Gordon Smyth 50k