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Dexseq
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DEXSeq Subsetting pre or post dispersion calculation?
DEXSeq
19 days ago
Ben J
• 0
6
votes
6
replies
383
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
5 months ago • updated 22 days ago
jeremymsimon
▴ 20
6
votes
11
replies
1.3k
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DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
DEXSeq
updated 12 days ago by
EChambers
• 0 • written 11 months ago by
Matthew Thornton
▴ 350
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Comment: Question about filter by expression (filterByExpr) in edgeR
by
Gordon Smyth
47k
You enter the whole design matrix to filterByExpr(). You don't choose.
Comment: Question about filter by expression (filterByExpr) in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth I have a follow up question, lets say If I am working with multivariable experiment (perform statistical analysis on each vari…
Comment: How to combine two DESeq2 objects (dds) for analysis
by
Luke
• 0
thanks ATpoint
Comment: How to combine two DESeq2 objects (dds) for analysis
by
Luke
• 0
thanks Tzu
Answer: LmFit error in EPIC methylation array analysis, Minfi
by
Gordon Smyth
47k
The error message tells you what the problem is. You've formed the design matrix incorrectly. If fact your design matrix doesn't even conta…
Votes
Comment: Gene Onotology: Can't get the goana function to work
Answer: Unable to upload an App in shinyapps.io with bioconductor packages
Comment: Help with Error in DiffBind
A: How to deal with Affymetrix GeneChip probeids that map to multiple genes
Comment: Failed to install Biobase
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