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DiffBind
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reset
0
votes
0
replies
15
views
Title in dba.plotProfile
DiffBind
19 hours ago
agata17
• 0
0
votes
0
replies
35
views
Interpret plot from DiffBind
DiffBind
5 days ago
Chris
• 0
0
votes
1
reply
96
views
dba.count with pre-defined regions produced only 10% results
DiffBind
diffbind
updated 6 days ago by
Rory Stark
★ 4.8k • written 13 days ago by
littlefishes20
▴ 10
0
votes
1
reply
136
views
DiffBind dba() in parallel
DiffBind
updated 6 days ago by
Rory Stark
★ 4.8k • written 7 days ago by
Shashank
• 0
1
vote
3
replies
197
views
DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-change
ChIPSeq
DiffBind
7 days ago • updated 5 days ago
lin.pei26
• 0
0
votes
0
replies
45
views
Fold values in Diffbind
DiffBind
7 days ago
bhandary.8590
• 0
0
votes
2
replies
155
views
Getting different differentially accessible peaks between versions
dba.report
DiffBind
updated 7 days ago by
Rory Stark
★ 4.8k • written 8 days ago by
jandrade
• 0
0
votes
0
replies
95
views
Help with Diffbind result
DiffBind
15 days ago
Chris
• 0
3
votes
4
replies
271
views
Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric argument to binary operator
DiffBind
22 days ago
Mark
• 0
0
votes
7
replies
439
views
DiffBind - question about showing significant difference on peaks with 0 fold change
DiffBind
5 weeks ago • updated 23 hours ago
Ti
• 0
0
votes
5
replies
336
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 23 days ago by
householdelsewhere
• 0 • written 5 weeks ago by
Oscar
• 0
0
votes
1
reply
692
views
diffBind analysis: only one replicate
diffbind
chipseq
updated 22 days ago by
lin.pei26
• 0 • written 3.8 years ago by
danielaperry2015
• 0
12 results • Page
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Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
ansleyharralson
• 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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